We seek a Software Infrastructure Engineer to offer technical support for developing and deploying the PDBe and PDBe-KB web services within the broader ecosystem of EMBL-EBI and the PDBe-KB and wwPDB collaborations.
The tasks for this post include the following:
To assist in supporting the weekly release process of PDBe.To support the development and deployment of PDBe and PDBe-KB web services, including microservice deploymentDeveloping and maintaining data pipelines to process and manage large-scale structural biology dataWorking with workflow orchestration tools like Apache Airflow and NextflowTo liaise with the EMBL-EBI Technical Services ClusterTo support the development and deployment of other scientific softwareThe successful candidate will report directly to the PDBe Infrastructure Lead as a Technical Officer. This post is an opportunity for the right person to bring IT skills and innovative ideas to help sustain the growing amount of structural biology data in the PDB and ensure that PDBe and PDBe-KB services remain sustainable.
You have
MSc in computer science, IT or a related field, or in bioinformatics with a demonstrated IT expertiseExpert in Python (3.x)Expert Linux scriptingProficiency in containerisationProficiency in relational databases (Oracle, PostgreSQL)Experience in developing and maintaining data pipelinesHands-on experience with workflow orchestration tools (e.g., Apache Airflow, Nextflow)Strong interpersonal and communication skillsProficiency in oral and written EnglishYou may also have
PhD in computer science, IT or a related field, or in bioinformatics with a demonstrated IT expertiseExperience in using KubernetesExperience with web servers (Apache/Nginx)Hands-on experience with CI/CD (GitLab CI/GitHub Actions)Familiarity with networkingFamiliarity with JavaKnowledge of, or affinity with, structural biology and bioinformaticsExperience working in international teamsOther Helpful Information
Flexible working arrangements -including hybrid working patterns, the team spend Wednesday & Thursday working together from the officeInterview Process, technical assessment followed by introductory interview and panel interviewsApply now! Benefits and Contract Information
Financial incentives:depending on circumstances, monthly family/marriage allowance of £272 monthly child allowance of £328 per child. Non resident allowance up to £556per month. Annual salary review, pension scheme, death benefit, long-term care, accident-at-work and unemployment insurancesHybrid working arrangementsPrivate medical insurancefor you and your immediate family (including all prescriptions and generous dental & optical cover)Generous time off: 30 days annual leave per year, in addition to eight bank holidaysRelocation packageincluding installation grant (as applicable)Campus life:Free shuttle bus to and from work, on-site library, subsidised on-site gym and cafeteria, casual dress code, extensive sports and social club activities (on campus and remotely)Family benefits:On-site nursery, child sick leave, generous parental leave, holiday clubs on campus and monthly family and child allowancesContract duration:This position is a 3 year grant based contract.Salary:Monthly salary starting at£3,229 or £ 3,612after tax but excl. pension & insurances) + benefits (Total package will be dependent on family circumstances)International applicants:We recruit internationally and successful candidates are offered visa exemptions. Read more on our page for international applicants.Diversity and inclusion:At EMBL-EBI, we strongly believe that inclusive and diverse teams benefit from higher levels of innovation and creative thought. We encourage applications from women, LGBTQ+ and individuals from all nationalities.Job location:This role is based in Hinxton, near Cambridge, UK. You will be required to relocate if you are based overseas and you will receive a generous relocation package to support you.To apply, please submit a covering letter and CV via our online system. Applications will close on13/05/2025.TPBN1_UKTJ